# This file contains correct output for each of the five testcases included in this directory ------------------------------------------------------------ TESTCASE 01 #GLOBAL ALIGNMENT=623 Q02085|SNAI_MOUSE MPRSFLVRKPSDPRRKPNYSELQDACVEFTFQQPYDQAHLLAAIPPPEVLNPAASLPTLIWDSLLVPQVRPVAWATLPLRESPKAVELTSLSDEDSGKSSQPPSPPSPAPSSFSSTSASS Q02085|SNAI_MOUSE MPRSFLVRKPSDPRRKPNYSELQDACVEFTFQQPYDQAHLLAAIPPPEVLNPAASLPTLIWDSLLVPQVRPVAWATLPLRESPKAVELTSLSDEDSGKSSQPPSPPSPAPSSFSSTSASS #LOCAL ALIGNMENT=623 Q02085|SNAI_MOUSE MPRSFLVRKPSDPRRKPNYSELQDACVEFTFQQPYDQAHLLAAIPPPEVLNPAASLPTLIWDSLLVPQVRPVAWATLPLRESPKAVELTSLSDEDSGKSSQPPSPPSPAPSSFSSTSASS Q02085|SNAI_MOUSE MPRSFLVRKPSDPRRKPNYSELQDACVEFTFQQPYDQAHLLAAIPPPEVLNPAASLPTLIWDSLLVPQVRPVAWATLPLRESPKAVELTSLSDEDSGKSSQPPSPPSPAPSSFSSTSASS ------------------------------------------------------------ TESTCASE 02 #GLOBAL ALIGNMENT=438 Q02085|SNAI_MOUSE MPRSFLVRKPSDPRRKPNYSELQDACVEFTFQQPYDQAHLLAAIPPPEVLNPAASLPTLIWDSLLVPQVRPVAWATLPLRESPKAVELTSLSDEDSGKSSQPPSPPSPA-SSFSSTSASS Q02085|SNAI_MOUSE MPRSFLVRKPSDPRRKPNYSELQ------------------------EVLNPAASLPTLIWDSLLVPQVRPVAWATLPLRESPKAVELTSLSDEDSGKSSQPPSPPSPAPSSFSSTSASS #LOCAL ALIGNMENT=438 Q02085|SNAI_MOUSE MPRSFLVRKPSDPRRKPNYSELQDACVEFTFQQPYDQAHLLAAIPPPEVLNPAASLPTLIWDSLLVPQVRPVAWATLPLRESPKAVELTSLSDEDSGKSSQPPSPPSPA-SSFSSTSASS Q02085|SNAI_MOUSE MPRSFLVRKPSDPRRKPNYSELQ------------------------EVLNPAASLPTLIWDSLLVPQVRPVAWATLPLRESPKAVELTSLSDEDSGKSSQPPSPPSPAPSSFSSTSASS ------------------------------------------------------------ TESTCASE 03 #GLOBAL ALIGNMENT=476 Q02085|SNAI_MOUSE MPRSFLVRKPSDPRRKPNYSELQDACVEFTFQQPYDQAHLLAAIPPPEVLNPAASLPTLIWDSLLVPQVRPVAWATLPLRESPKAVELTSLSDEDSGKSSQPPSPPSPAPSSFSSTSASS Q02085|SNAI_MOUSE -----------DPRRKPNYSELQDACVEFTFQQPYDQAHLLAAIPPPEVLNPAASLPTLIWDSLLVPQVRPVAWATLPLRESPKAVELTSLSDEDSGKSSQPPSPPSPA----------- #LOCAL ALIGNMENT=517 Q02085|SNAI_MOUSE DPRRKPNYSELQDACVEFTFQQPYDQAHLLAAIPPPEVLNPAASLPTLIWDSLLVPQVRPVAWATLPLRESPKAVELTSLSDEDSGKSSQPPSPPSPA Q02085|SNAI_MOUSE DPRRKPNYSELQDACVEFTFQQPYDQAHLLAAIPPPEVLNPAASLPTLIWDSLLVPQVRPVAWATLPLRESPKAVELTSLSDEDSGKSSQPPSPPSPA ------------------------------------------------------------ TESTCASE 04 #GLOBAL ALIGNMENT=767 Q9UHK6|AMACR_HUMAN MA--LQGISVVELSGLAPGPFCAMVLADFGARVVRVDRPGSRYDVSR--LGRGKRSLVLDLKQPRGAAVLRRLCKRSDVLLEPFRRGVMEKLQLGPEILQRENPRLIYARLSGFGQSGSFCRLAGHDINYLALSGVLSKIGRSGENPYAPLNLLADFAGGGLMCALGIIMALFDRTRTGKGQVIDANMVEGTAYLSSFLWKTQKSSLWEAPRGQNMLDGGAPFYTTYRTADGEFMAVGAIEPQFYELLIKGLGLKSDELPNQMSMDDWPEMKKKFADVFAKKTKAEWCQIFDGTDACVTPVLTFEEVVHHDHNKERGSFITSEEQDVSPRPAPLLLNTPAIPSFKRDPFIGEHTEEILEEFGFSREEIYQLNSDKIIESNKVKASL Rv1143|M_tub_Mcr MAGPLSGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSVDGISRDAMLRNRRIVTADLKSDQGLELALKLIAKADVLIEGYRPGVTERLGLGPEECAKVNDRLIYARMTGWGQTGPRSQQAGHDINYISLNGILHAIGRGDERPVPPLNLVGDFGGGSMFLLVGILAALWERQSSGKGQVVDAAMVDGSSVLIQMMWAMRATGMWTDTRGANMLDGGAPYYDTYECADGRYVAVGAIEPQFYAAMLAGLGLDAAELPPQNDRARWPELRALLTEAFASHDRDHWGAVFANSDACVTPVLAFGEVHNEPHIIERNTFYEANG-GWQPMPAPRFSRT-AS-SQPRPPAATIDIEAVL--------------TDW----D----G- #LOCAL ALIGNMENT=807 Q9UHK6|AMACR_HUMAN LQGISVVELSGLAPGPFCAMVLADFGARVVRVDRPGSRYDVSR--LGRGKRSLVLDLKQPRGAAVLRRLCKRSDVLLEPFRRGVMEKLQLGPEILQRENPRLIYARLSGFGQSGSFCRLAGHDINYLALSGVLSKIGRSGENPYAPLNLLADFAGGGLMCALGIIMALFDRTRTGKGQVIDANMVEGTAYLSSFLWKTQKSSLWEAPRGQNMLDGGAPFYTTYRTADGEFMAVGAIEPQFYELLIKGLGLKSDELPNQMSMDDWPEMKKKFADVFAKKTKAEWCQIFDGTDACVTPVLTFEEVVHHDHNKERGSFITSEEQDVSPRPAPLLLNTPAIPSFKRDPFIGEHTEEILEEF Rv1143|M_tub_Mcr LSGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSVDGISRDAMLRNRRIVTADLKSDQGLELALKLIAKADVLIEGYRPGVTERLGLGPEECAKVNDRLIYARMTGWGQTGPRSQQAGHDINYISLNGILHAIGRGDERPVPPLNLVGDFGGGSMFLLVGILAALWERQSSGKGQVVDAAMVDGSSVLIQMMWAMRATGMWTDTRGANMLDGGAPYYDTYECADGRYVAVGAIEPQFYAAMLAGLGLDAAELPPQNDRARWPELRALLTEAFASHDRDHWGAVFANSDACVTPVLAFGEVHNEPHIIERNTFYEANG-GWQPMPAPRFSRT-AS-SQPRPPAATIDIEAVLTDW ------------------------------------------------------------ TESTCASE 05 #GLOBAL ALIGNMENT=-306 P32432|SFP1_YEAST MDFTTMTMASNMATSTTTTATSAHASINSSSNFNIDIDSNQNTPSILINNNSDSSNGKNTDFNGVNNIHQKNIMNNTNNVHLYSPNIMDQTLLTPQDIAKLRRESIAHSQGMGGVSWGSISVGSWLRDEIISRRNSIVPASANGAASAAASATTTATNTLQIQQPTKRPSVSNPPYHRGYSISPQIAYTAYLPNLEKQYCKDYSCCGLSLPGLHDLLRHYEEAHISTSPNTTNMSQIPMNSAGNTSSSVRMTNNTSSANYNLQNNMAANTKNAGHKTNTMQAHSSNATNNTSINNMHANLQSNMDSNSTIRQSQHPHHQQNIIQQQLQSNSVNHTSGAVPTPSVMGSATASSTTANPNVISITGAPNSGLSMANHSQQLHLNGNLVDAVSTNDVFL-RTSNSPSRHVPHNKQINSNNNSGININNNTSHNSNINMGSKNAMVNRPHTFNNYSLNKTSRNPIQHQSRKIDPHQTDLSPLVLVQDIDLSFMDDDILGPSNHNSMNSVVNPTTGSHNYNTFHSSVHAKSSQNMVEDQDIDDIDDDDDVDDDDDDDDDDDTENGSSSNGKSVHNNNYKMPQQAYIDDPARRLYVMDHEEQKPFKCPVIGCEKTYKNQNGLKYHRLHGHQNQKLHENPDGTFSVIDPDSTDSFGDGMGSAKDKPYRCEVCGKRYKNLNGL-KYHR---GHSTH Q02085|SNAI_MOUSE ---------------------------------------------------------------------------------------M------P--------------------------------------RSFLVRKPSD---------------------PRRKP------------------------------------------------------------------------------------------------------------------------NYSE------LQDACVEF-TF---QQPYDQAH-----L-------LA-AIPPPEVLNPAASLPTLIWDSLLVPQVRP---VAWATLP--LRESPKAVELTSLSDEDSGKSSQPPSPPSPAPSSFSSTSASSLEA--------------E-AFI----AFP--GLGQLPKQLARLSVAK-DPQSRKI---------------------FNCKYCNKEYL------SLGAL--KMHIRS-------HTLPCVC---------------------TTCGKA-----FSRP---WLL---QG-HVRTHTGEKPFSCS--HCNRAFADRSNL---R--------AH---------L---QTHS--D----VK-R-YQCQACARTFSRMSLLHKHQESGCSGGPR #LOCAL ALIGNMENT=58 P32432|SFP1_YEAST MGSAKD----KPYRCEVCGKRYKNLNGLKYH-RGHS Q02085|SNAI_MOUSE LSVAKDPQSRKIFNCKYCNKEYLSLGALKMHIRSHT