Research

I am heading the Algorithmic Cheminformatics group at IMADA, SDU.

I am head of the section Algorithms at IMADA, SDU.

International Collaborations (far from complete)

Department	Univeristy	Country	Main Collaborator
Department of Systems Biology, Harvard Medical School, Fontana Lab	Harvard University	US	Walter Fontana
Theoretical Biochemistry Group, Institute for Theoretical Chemistry	University of Vienna	Austria	Christoph Flamm
Professur für Bioinformatik, Institut für Informatik	Universität Leipzig	Germany	Peter Stadler
Associate Professor of Computational Mathemtics	University of Stockholm	Sweden	Marc Hellmuth

Software

Tool	Short Description
MØD	MØD is a software package developed for graph-based cheminformatics. It includes a general graph transformation system for automatically generating reaction networks from graph grammar formulations of chemistries.
TreeREx	Inferring Mitochondrial Genome Rearrangements in a Phylogenetic Tree
DNA Templated Synthesis	Algorithms for the optimization of DNA-Templated Synthesis Programs
EpiM	Computing execution spaces of π-calculus processes
CREx	Common Interval Rearrangement Explorer
CoRePA	A tool for the reconstruction of cophylogenies
Tarzan	Another tool for the reconstruction of cophylogenies